Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs663521 chr1:84530053 G/T 0.000132 119 42.82 35 28.43 KM Plot
THYM rs66479467 chr5:179049672 A/C 0.000288 118 37.63 50.47 28.43 KM Plot
THYM rs66506031 chr19:4778897 G/C 1.67E-6 114 42.33 31.07 25.83 KM Plot
THYM rs66512754 chr12:121610755 CA/C 1.87E-5 118 46.6 46.27 24.87 KM Plot
THYM rs6651280 chr8:50123824 G/T 2.49E-10 118 48.33 49.4 25.83 KM Plot
THYM rs6651311 chr8:50122404 A/G 3.01E-10 117 48.33 49.75 25.83 KM Plot
THYM rs66542323 chr7:158782628 C/A 3.31E-6 116 45.87 35.67 27.77 KM Plot
THYM rs6662266 chr1:227383015 T/C 0.000123 119 19.63 37.13 42.82 KM Plot
THYM rs66623543 chr22:23925837 G/A 1.19E-6 117 49.5 27.1 22.17 KM Plot
THYM rs66630382 chr2:30673283 GGGA/G 5.86E-14 118 38.58 46.23 12.93 KM Plot
THYM rs66830923 chr19:29321277 C/T 5.15E-11 119 46.6 40.67 12.63 KM Plot
THYM rs66956566 chr7:29688702 A/G 5.22E-13 118 38.33 46.07 6 KM Plot
THYM rs6698331 chr1:85746929 T/C 7.94E-5 116 39.5 46.27 53.63 KM Plot
THYM rs67046187 chr6:163068532 C/A 0.000281 118 46.23 27.33 25.4 KM Plot
THYM rs6705814 chr2:30704104 T/C 6.33E-5 118 28.43 50.47 36.73 KM Plot